Full Link:
STRINGSTRING
Phatr48430 Phatr48430 Phatr13417 Phatr13417 Phatr19615 Phatr19615 Phatr25375 Phatr25375 Phatr31919 Phatr31919 rpl2 rpl2 Phatr12292 Phatr12292 Phatr11799 Phatr11799 Phatr14713 Phatr14713 Phatr14212 Phatr14212 Phatr14412 Phatr14412
"Phatr13417" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13417Predicted protein (510 aa)    
Predicted Functional Partners:
Phatr48430
Predicted protein (571 aa)
     
  0.979
rpl2
Predicted protein (257 aa)
     
  0.934
Phatr14212
Predicted protein (308 aa)
 
0.927
Phatr14412
Predicted protein (298 aa)
 
0.925
Phatr31919
Predicted protein (305 aa)
   
  0.914
Phatr19615
Predicted protein (121 aa)
     
    0.902
Phatr11799
Predicted protein (84 aa)
   
 
  0.892
Phatr14713
Predicted protein (137 aa)
   
  0.879
Phatr25375
Predicted protein (201 aa)
   
  0.877
Phatr12292
50S ribosomal protein L33 (57 aa)
     
 
  0.869
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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