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STRINGSTRING
Phatr48376 Phatr48376 Phatr13534 Phatr13534 Phatr43822 Phatr43822 Phatr8777 Phatr8777 Phatr44687 Phatr44687 Phatr45356 Phatr45356 Phatr13281 Phatr13281 Phatr12679 Phatr12679 Phatr21538 Phatr21538 Phatr19647 Phatr19647 Phatr19552 Phatr19552
"Phatr13534" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr13534Predicted protein (120 aa)    
Predicted Functional Partners:
Phatr45356
Predicted protein (479 aa)
     
      0.953
Phatr21538
Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
        0.787
Phatr13281
Predicted protein; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (181 aa)
     
        0.769
Phatr19552
Predicted protein (529 aa)
     
 
  0.706
Phatr12679
Predicted protein (290 aa)
     
      0.677
Phatr8777
Predicted protein (110 aa)
     
        0.659
Phatr44687
Predicted protein (426 aa)
     
        0.659
Phatr43822
Predicted protein (341 aa)
     
        0.659
Phatr48376
Predicted protein (381 aa)
     
   
  0.658
Phatr19647
Predicted protein (354 aa)
     
      0.658
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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