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STRINGSTRING
sDer1-2 sDer1-2 hUfd1 hUfd1 hNpl4 hNpl4 Phatr46568 Phatr46568 sUfd1 sUfd1 Phatr14397 Phatr14397 sDer1-1 sDer1-1 Phatr31927 Phatr31927 Phatr47516 Phatr47516 hDer1-2 hDer1-2 hDer1-1 hDer1-1
"Phatr14397" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr14397Predicted protein (172 aa)    
Predicted Functional Partners:
Phatr46568
Predicted protein (821 aa)
   
 
0.878
Phatr31927
Predicted protein (321 aa)
     
 
  0.779
Phatr47516
Predicted protein (403 aa)
     
 
  0.765
hNpl4
Predicted protein (473 aa)
     
  0.760
sUfd1
Predicted protein (191 aa)
     
  0.733
hUfd1
Predicted protein (202 aa)
     
  0.733
hDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (205 aa)
       
  0.667
sDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (163 aa)
       
  0.667
hDer1-1
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (209 aa)
       
  0.667
sDer1-2
Predicted protein; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (187 aa)
       
  0.667
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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