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CPS-II CPS-II Phatr24195 Phatr24195 Phatr13855 Phatr13855 Phatr11965 Phatr11965 PheRS PheRS Phatr31718 Phatr31718 PHATR_3578 PHATR_3578 Phatr15960 Phatr15960 Phatr10768 Phatr10768 Phatr14856 Phatr14856 Phatr20893 Phatr20893
"Phatr15960" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr15960Predicted protein; Responsible for synthesis of pseudouridine from uracil (325 aa)    
Predicted Functional Partners:
Phatr11965
Predicted protein (194 aa)
 
     
  0.602
Phatr20893
Predicted protein (331 aa)
   
  0.554
Phatr14856
Predicted protein (151 aa)
   
  0.554
Phatr13855
Predicted protein (217 aa)
   
  0.554
Phatr10768
Predicted protein (252 aa)
   
  0.554
Phatr31718
Inosine-5’-monophosphate dehydrogenase (468 aa)
   
   
  0.520
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.508
CPS-II
Predicted protein (1542 aa)
   
   
  0.508
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
   
  0.508
PHATR_3578
Pseudouridine synthase (293 aa)
   
   
  0.504
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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