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STRINGSTRING
PHATR_1155 PHATR_1155 MSH4 MSH4 Phatr30514 Phatr30514 P5CS P5CS Phatr18027 Phatr18027 Phatr21116 Phatr21116 Phatr16375 Phatr16375 COPbeta2 COPbeta2 Phatr19324 Phatr19324 Phatr10902 Phatr10902 Phatr13232 Phatr13232
"Phatr16375" - Pyrroline-5-carboxylate reductase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16375Pyrroline-5-carboxylate reductase (266 aa)    
Predicted Functional Partners:
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
 
   
  0.885
Phatr18027
Predicted protein (706 aa)
 
   
  0.885
Phatr19324
Predicted protein (554 aa)
         
  0.633
Phatr13232
Predicted protein (505 aa)
     
 
  0.623
PHATR_1155
Predicted protein (509 aa)
     
 
  0.623
Phatr10902
Predicted protein (473 aa)
         
  0.593
COPbeta2
Predicted protein (962 aa)
       
      0.557
MSH4
Muts-like protein 4 (116 aa)
     
 
  0.555
Phatr30514
Predicted protein (351 aa)
         
  0.533
Phatr21116
Argininosuccinate synthase (418 aa)
         
  0.533
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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