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STRINGSTRING
Phatr49632 Phatr49632 Phatr28874 Phatr28874 Phatr6433 Phatr6433 Phatr5904 Phatr5904 Phatr44534 Phatr44534 Phatr19669 Phatr19669 Phatr38130 Phatr38130 Phatr49220 Phatr49220 Phatr38893 Phatr38893 Phatr31375 Phatr31375 Phatr16493 Phatr16493
"Phatr16493" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr16493Predicted protein (214 aa)    
Predicted Functional Partners:
Phatr38893
Predicted protein (174 aa)
     
  0.991
Phatr44534
Predicted protein (417 aa)
     
  0.991
Phatr49220
Predicted protein (217 aa)
     
  0.973
Phatr19669
Predicted protein (202 aa)
     
  0.876
Phatr38130
Predicted protein (199 aa)
       
  0.711
Phatr49632
Predicted protein (420 aa)
       
  0.669
Phatr28874
Predicted protein (410 aa)
       
  0.669
Phatr6433
Predicted protein (143 aa)
     
  0.652
Phatr5904
Predicted protein (206 aa)
     
  0.652
Phatr31375
Predicted protein (168 aa)
       
  0.603
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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