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Phatr52174 Phatr52174 Phatr13581 Phatr13581 Phatr20335 Phatr20335 Phatr23164 Phatr23164 Phatr17909 Phatr17909 Phatrdraft1638 Phatrdraft1638 Phatr13192 Phatr13192 Phatr47992 Phatr47992 Phatr26061 Phatr26061 Phatr19937 Phatr19937 Phatr12309 Phatr12309
"Phatr17909" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr17909Predicted protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (157 aa)    
Predicted Functional Partners:
Phatr13192
Predicted protein (74 aa)
     
  0.985
Phatr12309
Predicted protein (134 aa)
     
  0.965
Phatr26061
Predicted protein (552 aa)
     
  0.848
Phatr23164
Predicted protein (489 aa)
     
  0.818
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
     
  0.791
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
     
  0.791
Phatrdraft1638
Predicted protein (548 aa)
     
  0.788
Phatr20335
Predicted protein (665 aa)
     
  0.762
Phatr19937
Predicted protein (1012 aa)
     
  0.762
Phatr47992
Predicted protein (432 aa)
     
  0.701
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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