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Phatr48416 Phatr48416 Phatr43105 Phatr43105 Phatr45356 Phatr45356 helicase_6 helicase_6 Phatr17967 Phatr17967 Phatr14145 Phatr14145 Phatr8777 Phatr8777 Phatr3334 Phatr3334 Phatr45828 Phatr45828 Phatr30960 Phatr30960 Phatr30365 Phatr30365
"Phatr17967" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr17967Predicted protein; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (315 aa)    
Predicted Functional Partners:
helicase_6
Predicted protein (476 aa)
     
 
  0.925
Phatr8777
Predicted protein (110 aa)
     
 
  0.885
Phatr45356
Predicted protein (479 aa)
     
      0.867
Phatr43105
Predicted protein (455 aa)
     
 
  0.847
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.847
Phatr48416
Predicted protein (511 aa)
   
 
  0.846
Phatr3334
Predicted protein (290 aa)
   
 
  0.846
Phatr14145
Predicted protein (516 aa)
     
      0.844
Phatr30960
Predicted protein (313 aa)
     
      0.840
Phatr45828
Predicted protein (805 aa)
     
        0.836
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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