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Phatr8717 Phatr8717 Phatr18087 Phatr18087 Phatr25204 Phatr25204 Phatr27735 Phatr27735 Phatr47067 Phatr47067 Phatr18080 Phatr18080 CPS-II CPS-II Phatr17772 Phatr17772 Phatr24195 Phatr24195 Phatr23429 Phatr23429 Phatr1840 Phatr1840
"Phatr18080" - Phosphoribosylaminoimidazole-succinocarboxamide synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr18080Phosphoribosylaminoimidazole-succinocarboxamide synthase (268 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
 
  0.999
Phatr17772
Predicted protein (1313 aa)
   
 
  0.993
Phatr23429
Predicted protein (615 aa)
   
 
  0.990
Phatr25204
Predicted protein (598 aa)
   
 
  0.954
Phatr18087
Adenylosuccinate lyase (499 aa)
   
  0.899
Phatr27735
Predicted protein (538 aa)
   
   
  0.894
Phatr1840
Predicted protein (503 aa)
   
  0.878
CPS-II
Predicted protein (1542 aa)
   
   
  0.765
Phatr24195
CPS III, carbamoyl-phosphate synthase mitochindrial (1463 aa)
   
   
  0.765
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
   
 
  0.764
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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