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STRINGSTRING
MCM4 MCM4 MCM3 MCM3 NURF-55 NURF-55 POLA POLA MCM7 MCM7 Phatr52450 Phatr52450 Phatr44165 Phatr44165 MCM5 MCM5 PCNA PCNA Phatr19333 Phatr19333 SMC2 SMC2
"Phatr19333" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19333Predicted protein (411 aa)    
Predicted Functional Partners:
NURF-55
Chromatin assembly factor subunit c (466 aa)
     
 
  0.970
Phatr52450
Predicted protein (154 aa)
     
 
  0.952
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (260 aa)
     
 
  0.949
POLA
DNA polymerase (1147 aa)
     
 
  0.750
MCM5
Predicted protein (667 aa)
     
        0.655
MCM7
Predicted protein (618 aa)
     
        0.652
SMC2
Predicted protein (1213 aa)
     
   
  0.590
MCM4
Predicted protein (791 aa)
     
   
  0.546
MCM3
Predicted protein (551 aa)
     
   
  0.521
Phatr44165
Predicted protein (1356 aa)
     
        0.519
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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