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STRINGSTRING
Phatr16814 Phatr16814 Phatr45356 Phatr45356 Phatr47058 Phatr47058 Phatr30365 Phatr30365 Phatr8777 Phatr8777 Phatr14145 Phatr14145 Phatr29217 Phatr29217 Phatr43105 Phatr43105 Phatr21996 Phatr21996 Phatr15862 Phatr15862 Phatr19438 Phatr19438
"Phatr19438" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr19438Predicted protein (529 aa)    
Predicted Functional Partners:
Phatr14145
Predicted protein (516 aa)
     
 
  0.956
Phatr21996
Predicted protein (417 aa)
     
 
  0.947
Phatr15862
Predicted protein (530 aa)
     
 
  0.947
Phatr43105
Predicted protein (455 aa)
     
 
  0.943
Phatr30365
Predicted protein; Involved in the biogenesis of the 60S ribosomal subunit (677 aa)
     
 
  0.943
Phatr45356
Predicted protein (479 aa)
     
      0.910
Phatr8777
Predicted protein (110 aa)
     
 
  0.905
Phatr16814
Predicted protein (662 aa)
     
 
  0.899
Phatr29217
Predicted protein (406 aa)
     
 
  0.891
Phatr47058
Predicted protein (606 aa)
     
      0.887
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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