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STRINGSTRING
Phatr10821 Phatr10821 Phatr31068 Phatr31068 Phatr11441 Phatr11441 Phatr50825 Phatr50825 Phatr47430 Phatr47430 Phatr20034 Phatr20034 Phatr11653 Phatr11653 Phatr27838 Phatr27838
"Phatr20034" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr20034Predicted protein (306 aa)    
Predicted Functional Partners:
Phatr31068
Predicted protein (353 aa)
   
 
0.964
Phatr27838
Predicted protein (1040 aa)
     
      0.733
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
       
 
  0.648
Phatr47430
Predicted protein (125 aa)
     
 
  0.603
Phatr10821
Predicted protein (73 aa)
       
 
  0.572
Phatr50825
Predicted protein (451 aa)
   
      0.482
Phatr11653
Predicted protein (174 aa)
   
        0.439
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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