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Phatr52450 Phatr52450 H2B-1a H2B-1a Phatr26802 Phatr26802 Phatr34971 Phatr34971 PHATR_2957 PHATR_2957 Phatr45431 Phatr45431 H4-1a H4-1a H2A-m2 H2A-m2 H3.3 H3.3 H2A-3a H2A-3a Phatr11823 Phatr11823
"H3.3" - Histone H3 in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3.3Histone H3 (136 aa)    
Predicted Functional Partners:
Phatr45431
Predicted protein (1158 aa)
     
  0.949
H2A-m2
Histone H2A (138 aa)
     
  0.947
H2A-3a
Histone H2A (126 aa)
     
  0.947
Phatr26802
Histone H2A (126 aa)
     
  0.947
H2B-1a
Histone H2B; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (116 aa)
 
 
  0.930
Phatr11823
Histone H2B (116 aa)
 
 
  0.930
PHATR_2957
Predicted protein (338 aa)
       
  0.924
Phatr34971
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
 
 
  0.920
H4-1a
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (103 aa)
 
 
  0.920
Phatr52450
Predicted protein (154 aa)
     
 
  0.919
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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