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STRINGSTRING
LKRSDH LKRSDH Phatr13386 Phatr13386 Phatr55177 Phatr55177 Phatr22113 Phatr22113 Phatr52316 Phatr52316 Phatr21592 Phatr21592 Phatr7913 Phatr7913 Phatr38509 Phatr38509 Phatr34582 Phatr34582 Phatr7910 Phatr7910 Phatr51460 Phatr51460
"Phatr21592" - Diaminopimelate decarboxylase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr21592Diaminopimelate decarboxylase (481 aa)    
Predicted Functional Partners:
Phatr34582
Predicted protein (334 aa)
   
 
  0.970
LKRSDH
Saccharopine dehydrogenase (682 aa)
       
  0.912
Phatr52316
Aspartokinase (468 aa)
   
 
  0.879
Phatr22113
Bifunctional aspartokinase (870 aa)
 
 
  0.804
Phatr38509
Predicted protein (301 aa)
       
  0.779
Phatr7913
Predicted protein (76 aa)
   
  0.746
Phatr7910
Predicted protein (70 aa)
   
  0.746
Phatr55177
Spermine/spermidine synthase (299 aa)
   
  0.746
Phatr51460
Annotation not available (348 aa)
   
  0.746
Phatr13386
Spermine/spermidine synthase (275 aa)
   
  0.746
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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