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STRINGSTRING
DHLTA_1 DHLTA_1 DHLTA_3 DHLTA_3 Phatr38009 Phatr38009 PDHA1 PDHA1 ACC2 ACC2 Phatrdraft1828 Phatrdraft1828 DHLTA_2 DHLTA_2 PDH1 PDH1 Phatr232 Phatr232 Phatr11174 Phatr11174 Phatr12990 Phatr12990
"Phatr232" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr232Predicted protein (986 aa)    
Predicted Functional Partners:
ACC2
Biotin carboxylase (2282 aa)
     
      0.654
PDHA1
Precursor of dehydrogenase pyruvate dehydrogenase E1 component alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2) (413 aa)
       
      0.639
PDH1
Precursor of dehydrogenase pyruvate dehydrogenase E1, alpha and beta subunits (325 aa)
       
      0.639
Phatr12990
Predicted protein (500 aa)
       
      0.624
Phatr11174
Predicted protein (627 aa)
   
      0.556
Phatrdraft1828
Predicted protein (477 aa)
     
      0.509
Phatr38009
Predicted protein (230 aa)
     
      0.509
DHLTA_3
Dihydrolipoamide acetyl transferase (477 aa)
     
      0.509
DHLTA_1
Dihydrolipoamide acetyltransferase (492 aa)
     
      0.509
DHLTA_2
Dihydrolipoamide acetyl transferase (435 aa)
     
      0.509
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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