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STRINGSTRING
Phatr9280 Phatr9280 Phatr4074 Phatr4074 Phatr45509 Phatr45509 Phatr12501 Phatr12501 Phatr29551 Phatr29551 Phatr23552 Phatr23552 Phatr25840 Phatr25840 Phatr40650 Phatr40650 Phatr2761 Phatr2761 Phatr10260 Phatr10260 Phatr10581 Phatr10581
"Phatr23552" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr23552Predicted protein (1060 aa)    
Predicted Functional Partners:
Phatr25840
Predicted protein (1128 aa)
 
0.999
Phatr12501
Predicted protein (238 aa)
       
  0.947
Phatr45509
Predicted protein (723 aa)
         
  0.946
Phatr10581
Predicted protein (533 aa)
 
0.899
Phatr10260
Predicted protein (465 aa)
 
0.897
Phatr4074
Predicted protein (273 aa)
     
 
    0.804
Phatr40650
Predicted protein (582 aa)
     
 
  0.726
Phatr9280
Predicted protein (329 aa)
     
 
    0.572
Phatr29551
Predicted protein (194 aa)
     
 
    0.572
Phatr2761
Predicted protein (298 aa)
     
 
    0.572
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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