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STRINGSTRING
HCL1 HCL1 IPMDH IPMDH Phatr20547 Phatr20547 ACL ACL GltX GltX Phatr24772 Phatr24772 Phatr37341 Phatr37341 Phatr24739 Phatr24739 Phatr44618 Phatr44618 Phatr38362 Phatr38362 PPdK PPdK
"Phatr24772" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr24772Predicted protein (801 aa)    
Predicted Functional Partners:
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
 
  0.999
Phatr44618
2-isopropylmalate synthase (663 aa)
 
  0.997
Phatr38362
2-isopropylmalate synthase (581 aa)
   
  0.996
HCL1
Hydroxymethylglutaryl-coenzyme A lyase (321 aa)
   
  0.966
Phatr20547
Homeobox protein (646 aa)
 
 
  0.946
ACL
Atp-citrate synthase (1082 aa)
   
 
  0.926
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
 
  0.911
Phatr24739
Predicted protein (1594 aa)
   
 
  0.911
PPdK
Predicted protein (1011 aa)
     
  0.900
Phatr37341
Annotation not available (628 aa)
 
   
  0.877
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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