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Phatr25204 Phatr25204 Phatr20773 Phatr20773 Phatr47067 Phatr47067 Phatr19901 Phatr19901 Phatr44863 Phatr44863 Phatr27735 Phatr27735 Phatr20608 Phatr20608 Phatr41702 Phatr41702 Phatr17238 Phatr17238 Phatr11965 Phatr11965 Phatr24792 Phatr24792
"Phatr24792" - Queuine tRNA-ribosyltransferase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
Phatr24792Queuine tRNA-ribosyltransferase; Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine) (513 aa)    
Predicted Functional Partners:
Phatr41702
Predicted protein (671 aa)
         
  0.646
Phatr27735
Predicted protein (538 aa)
   
   
  0.527
Phatr44863
Predicted protein (956 aa)
   
   
  0.488
Phatr20608
Predicted protein (830 aa)
   
   
  0.488
Phatr47067
Predicted protein (1237 aa)
   
   
  0.470
Phatr20773
Predicted protein (484 aa)
   
   
  0.456
Phatr11965
Predicted protein (194 aa)
   
   
  0.456
Phatr25204
Predicted protein (598 aa)
   
   
  0.445
Phatr19901
Predicted protein (900 aa)
         
  0.428
Phatr17238
Anthranilate synthase (958 aa)
   
   
  0.424
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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