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RPN7 RPN7 CDKA1 CDKA1 Phatr45431 Phatr45431 APC3 APC3 CDH1 CDH1 APC8 APC8 APC2 APC2 CDKA2 CDKA2 APC10 APC10 APC6 APC6 APC7 APC7
"CDH1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH1Predicted protein (326 aa)    
Predicted Functional Partners:
APC6
Predicted protein (381 aa)
     
  0.878
Phatr45431
Predicted protein (1158 aa)
     
  0.848
APC10
Predicted protein (148 aa)
     
  0.840
CDKA1
Predicted protein (290 aa)
     
  0.828
CDKA2
Predicted protein (298 aa)
     
  0.826
APC8
Predicted protein (648 aa)
     
  0.821
APC3
Predicted protein (336 aa)
     
  0.821
APC7
Predicted protein (572 aa)
     
  0.796
RPN7
Regulatory proteasome non-atpase subunit 7 (330 aa)
       
    0.750
APC2
Predicted protein (767 aa)
     
    0.750
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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