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Phatr26035 Phatr26035 Phatr9929 Phatr9929 Phatr44242 Phatr44242 Phatr21538 Phatr21538 Phatr8777 Phatr8777 Phatr45441 Phatr45441 Phatr27263 Phatr27263 Phatr30960 Phatr30960 Phatr19552 Phatr19552 BMS1 BMS1 Phatr47804 Phatr47804
"Phatr27263" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr27263Predicted protein (196 aa)    
Predicted Functional Partners:
Phatr45441
Predicted protein; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (379 aa)
     
  0.872
Phatr9929
Predicted protein (196 aa)
     
  0.830
Phatr26035
Predicted protein (266 aa)
     
      0.817
Phatr19552
Predicted protein (529 aa)
     
    0.796
Phatr30960
Predicted protein (313 aa)
     
        0.782
Phatr8777
Predicted protein (110 aa)
     
        0.776
BMS1
Ribosome biogenesis protein BMS1 (1096 aa)
     
  0.766
Phatr47804
Predicted protein (94 aa)
 
 
        0.764
Phatr44242
Predicted protein (890 aa)
     
    0.756
Phatr21538
Predicted protein; Involved in nucleolar processing of pre-18S ribosomal RNA (256 aa)
     
 
    0.756
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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