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Phatr49591 Phatr49591 Phatr49253 Phatr49253 Phatr31367 Phatr31367 Phatr46971 Phatr46971 FEN1 FEN1 Phatr29606 Phatr29606 Phatr17895 Phatr17895 Phatr16162 Phatr16162 Phatr47120 Phatr47120 Phatr39942 Phatr39942 Phatr11850 Phatr11850
"Phatr29606" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29606Predicted protein (330 aa)    
Predicted Functional Partners:
Phatr49253
Predicted protein (566 aa)
     
 
  0.762
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5’-flap endonuclease and 5’-3’ exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5’-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5’-end of a downstream Okazaki fragment. It enters the flap from the 5’-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site-terminated flap. Acts as a [...] (421 aa)
     
 
  0.705
Phatr46971
Predicted protein (696 aa)
     
 
  0.705
Phatr31367
Predicted protein (819 aa)
     
 
  0.673
Phatr49591
Predicted protein (202 aa)
     
 
  0.671
Phatr39942
Predicted protein (301 aa)
       
      0.639
Phatr17895
Predicted protein (342 aa)
       
      0.639
Phatr47120
Predicted protein (748 aa)
     
      0.638
Phatr16162
Predicted protein (284 aa)
     
      0.638
Phatr11850
Predicted protein (285 aa)
     
      0.638
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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