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STRINGSTRING
HemA HemA Phatr42910 Phatr42910 Phatr36955 Phatr36955 Phatr23862 Phatr23862 Phatr36081 Phatr36081 Phatr29793 Phatr29793 Phatr22113 Phatr22113 Phatr50796 Phatr50796 Phatr3351 Phatr3351 Phatr11462 Phatr11462 Phatr19122 Phatr19122
"Phatr29793" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29793Predicted protein (424 aa)    
Predicted Functional Partners:
Phatr42910
Predicted protein (491 aa)
   
 
  0.861
Phatr36081
Predicted protein (358 aa)
   
 
  0.861
Phatr23862
Predicted protein (283 aa)
   
 
  0.861
Phatr36955
Predicted protein (132 aa)
       
  0.677
Phatr11462
Predicted protein (130 aa)
       
  0.677
Phatr22113
Bifunctional aspartokinase (870 aa)
         
  0.503
Phatr3351
Predicted protein (281 aa)
   
   
  0.439
Phatr19122
Predicted protein (322 aa)
   
   
  0.439
HemA
Glutamyl-tRNA reductase (512 aa)
   
   
  0.429
Phatr50796
Predicted protein (457 aa)
       
  0.406
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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