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STRINGSTRING
Phatr22319 Phatr22319 Phatr5467 Phatr5467 Phatr54869 Phatr54869 Ran1 Ran1 Phatr43752 Phatr43752 Phatr45915 Phatr45915 Ran2 Ran2 Phatr29967 Phatr29967 Phatr42712 Phatr42712 Phatr1457 Phatr1457 Phatr29174 Phatr29174
"Phatr29967" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr29967Predicted protein (871 aa)    
Predicted Functional Partners:
Ran1
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (213 aa)
     
  0.976
Ran2
Predicted protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (254 aa)
     
  0.976
Phatr42712
Predicted protein (219 aa)
     
  0.975
Phatr43752
Predicted protein (2360 aa)
     
  0.969
Phatr45915
Predicted protein (1242 aa)
     
 
  0.949
Phatr5467
Predicted protein (190 aa)
     
  0.949
Phatr29174
Predicted protein (544 aa)
     
  0.949
Phatr22319
Predicted protein (577 aa)
     
  0.949
Phatr1457
Predicted protein (313 aa)
     
  0.949
Phatr54869
Predicted protein (445 aa)
     
  0.937
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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