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STRINGSTRING
Phatr12578 Phatr12578 SUMO SUMO hUba1 hUba1 Phatr49037 Phatr49037 UBA1 UBA1 Phatr20308 Phatr20308 sUbi sUbi hUbi hUbi UBC1 UBC1 Phatr47992 Phatr47992 APC11 APC11
"UBC1" - Ubiquitin carrier protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBC1Ubiquitin carrier protein (197 aa)    
Predicted Functional Partners:
APC11
Predicted protein (82 aa)
     
  0.973
hUba1
Ubiquitin-activating enzyme E1 (1050 aa)
     
  0.851
UBA1
Ubiquitin-activating enzyme E1, protein 1 (179 aa)
     
  0.851
sUbi
Ubiquitin-like protein (268 aa)
     
  0.849
hUbi
Predicted proteinUbiquitin extension protein 4 (381 aa)
     
  0.849
Phatr49037
Predicted protein (205 aa)
     
  0.849
Phatr20308
Predicted protein (148 aa)
     
  0.845
Phatr47992
Predicted protein (432 aa)
       
  0.831
SUMO
Small ubiquitin-like modifier (103 aa)
       
  0.813
Phatr12578
Predicted protein (68 aa)
       
  0.813
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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