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Phatr4402 Phatr4402 Phatr22113 Phatr22113 SHMT2 SHMT2 GDCT GDCT Phatr30471 Phatr30471 Phatr8717 Phatr8717 SHMT SHMT METH METH Phatr28431 Phatr28431 Phatr1690 Phatr1690 Phatr28056 Phatr28056
"Phatr30471" - Methylenetetrahydrofolate reductase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30471Methylenetetrahydrofolate reductase (376 aa)    
Predicted Functional Partners:
METH
Methionine synthase (1245 aa)
   
 
  0.991
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
   
 
  0.958
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
   
 
  0.958
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
   
 
  0.958
GDCT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine (421 aa)
   
 
  0.954
Phatr4402
Predicted protein (274 aa)
   
 
  0.954
Phatr1690
Predicted protein (495 aa)
     
 
  0.947
Phatr28056
Predicted protein (757 aa)
 
  0.912
Phatr28431
Methylenetetrahydrofolate reductase (634 aa)
   
   
 
0.816
Phatr22113
Bifunctional aspartokinase (870 aa)
   
   
  0.765
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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