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STRINGSTRING
Phatr16599 Phatr16599 Phatr12107 Phatr12107 Phatr52174 Phatr52174 Phatr14735 Phatr14735 Phatr47067 Phatr47067 Phatr45509 Phatr45509 Phatr30807 Phatr30807 ACL ACL Phatr40650 Phatr40650 Phatr22113 Phatr22113 Phatr27735 Phatr27735
"Phatr30807" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatr30807Predicted protein (641 aa)    
Predicted Functional Partners:
Phatr14735
Predicted protein (228 aa)
 
  0.915
Phatr16599
Predicted protein; Involved in the catabolism of quinolinic acid (QA) (294 aa)
     
  0.912
ACL
Atp-citrate synthase (1082 aa)
         
  0.750
Phatr27735
Predicted protein (538 aa)
         
  0.694
Phatr12107
Predicted protein (460 aa)
         
  0.646
Phatr22113
Bifunctional aspartokinase (870 aa)
         
  0.579
Phatr40650
Predicted protein (582 aa)
       
  0.529
Phatr45509
Predicted protein (723 aa)
         
  0.480
Phatr47067
Predicted protein (1237 aa)
         
  0.434
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
           
  0.424
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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