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dnaX dnaX pyk pyk Ldb1629 Ldb1629 dnaN dnaN dut dut rpoB rpoB polA polA rpoC rpoC rtpR rtpR atpD atpD atpE atpE
"rtpR" - Ribonucleoside-triphosphate reductase in Lactobacillus delbrueckii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtpRRibonucleoside-triphosphate reductase (739 aa)    
Predicted Functional Partners:
dut
dUTP diphosphatase (184 aa)
         
    0.984
atpD
ATP synthase F0F1 subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits (479 aa)
       
    0.952
atpE
ATP synthase F0F1 subunit C (74 aa)
       
  0.928
polA
DNA polymerase I (886 aa)
     
 
  0.916
dnaN
DNA polymerase III, beta chain (375 aa)
       
  0.912
pyk
Pyruvate kinase (589 aa)
   
   
    0.911
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1221 aa)
       
  0.909
Ldb1629
Hypothetical protein (290 aa)
       
  0.906
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1221 aa)
       
  0.904
dnaX
DNA polymerase III, gamma/tau subunit (607 aa)
     
 
    0.903
Your Current Organism:
Lactobacillus delbrueckii
NCBI taxonomy Id: 390333
Other names: Bacillus Delbrucki, Bacillus acidificans longissimus, Bacterium delbrucki, L. delbrueckii, L. delbrueckii subsp. bulgaricus, L. delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus bulgaricus, Lactobacillus delbrucki, Lactobacillus delbrueckii, Lactobacillus delbrueckii (SUBSP. BULGARICUS), Lactobacillus delbrueckii bulgaricus, Lactobacillus delbrueckii subsp. bulgaricus, Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus DSM 20081, Lactobacillus delbrueckii subsp. bulgaricus str. ATCC 11842, Lactobacillus delbrueckii subsp. bulgaricus strain ATCC 11842, Lactobacterium delbrucki, Plocamobacterium delbrucki, Thermobacterium bulgaricum, Thermobacterium cereale, Ulvina delbrucki
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