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STRINGSTRING
col-38 col-38 F47C12.7 F47C12.7 F01D5.10 F01D5.10 zip-11 zip-11 F47B8.3 F47B8.3 sulp-8 sulp-8 H12D21.7 H12D21.7 gst-16 gst-16 col-79 col-79 cyp-33C7 cyp-33C7 gsr-1 gsr-1
"gst-16" - Glutathione S-Transferase family member in Caenorhabditis elegans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gst-16Glutathione S-Transferase family member (gst-16) (208 aa)    
Predicted Functional Partners:
gsr-1
Protein GSR-1, isoform b (473 aa)
           
  0.703
zip-11
Protein ZIP-11 (228 aa)
           
  0.609
H12D21.7
Protein MPST-3 (306 aa)
           
  0.609
F47C12.7
Protein F47C12.7 (185 aa)
           
  0.609
F01D5.10
Protein F01D5.10 (347 aa)
           
  0.609
col-79
Putative cuticle collagen 79 ; Nematode cuticles are composed largely of collagen-like proteins. The cuticle functions both as an exoskeleton and as a barrier to protect the worm from its environment (By similarity) (283 aa)
           
  0.609
cyp-33C7
CYtochrome P450 family member (cyp-33C7) (494 aa)
           
  0.579
sulp-8
SULfate Permease family member (sulp-8) (611 aa)
           
  0.559
col-38
COLlagen family member (col-38) (287 aa)
           
  0.559
F47B8.3
Protein F47B8.3 (284 aa)
           
  0.558
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Caenorhabditis elegans, Rhabditis elegans, nematode
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