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JGI262574 JGI262574 JGI286329 JGI286329 JGI115930 JGI115930 JGI60607 JGI60607 JGI281552 JGI281552 JGI75126 JGI75126 JGI103129 JGI103129 JGI116843 JGI116843 JGI129781 JGI129781 JGI110155 JGI110155 JGI217516 JGI217516
"JGI103129" - Putative uncharacterized protein in Branchiostoma floridae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JGI103129Putative uncharacterized protein (926 aa)    
Predicted Functional Partners:
JGI286329
Annotation not available (1472 aa)
   
  0.966
JGI281552
Histone deacetylase (431 aa)
   
0.929
JGI262574
Annotation not available (431 aa)
   
0.929
JGI217516
Histone deacetylase (462 aa)
   
0.929
JGI110155
Annotation not available (462 aa)
   
0.929
JGI75126
Putative uncharacterized protein (192 aa)
   
  0.928
JGI115930
Annotation not available (273 aa)
   
  0.928
JGI116843
Annotation not available (216 aa)
   
  0.927
JGI60607
Annotation not available (251 aa)
   
  0.924
JGI129781
Putative uncharacterized protein ; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling (252 aa)
   
  0.924
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Branchiostoma, Branchiostoma floridae, Branchiostomidae, Cephalochordata, Florida lancelet, amphioxi, amphioxius, lancelets
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