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There are several matches for 'ECF sigma factor SigX'.
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233 matches
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organism
protein
1)
Bacillus subtilis 168
sigX - RNA polymerase ECF(extracytoplasmic function)-type sigma factor sigma(X); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. May be involved in the regulation of iron metabolism; Belongs to the sigma-70 factor family. ECF subfamily.
[a.k.a. BSU23100, CAB14242.2, CAB14242,
ECF sigma factor SigX
]
2)
Flavobacteriales bacterium ALC1
EDP69819.1 -
ECF
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. FBALC1_09817,
ECF sigma factor SigX
, WP_008272206.1]
3)
Pseudomonas aeruginosa
sigX -
ECF
sigma
factor
SigX
; Product name confidence: Class 1 (Function experimentally demonstrated in P. aeruginosa); Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. PA1776, AAG05165.1, NP_250467,
ECF sigma factor SigX
]
4)
Muricauda ruestringensis
AEM71125.1 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; PFAM:
Sigma
-70, region 4;
Sigma
-70 region 2; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized
sigma
subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: sli:Slin_4745 RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; PFAM: RNA polymerase
sigma
-70 region 2; RNA polymerase
sigma
factor
70, region 4 type 2; SPTR:
ECF
sigma
factor
SigX
; TIGRFAM: RNA polymerase
sigma
-70.
[a.k.a. Murru_2086, AEM71125, IPR013325]
5)
Thiothrix nivea
EIJ33217.1 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; PFAM:
Sigma
-70, region 4;
Sigma
-70 region 2; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized
sigma
subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: pba:PSEBR_a1683
ECF
sigma
factor
SigX
; PFAM: RNA polymerase
sigma
-70 region 2; RNA polymerase
sigma
factor
70, region 4 type 2; SPTR: RNA polymerase
sigma
factor
; TIGRFAM: RNA polymerase
sigma
-70.
[a.k.a. Thini_0579, IPR000838, IPR013325]
6)
Mycobacterium leprae
ML1448 - Similar to many
ECF
-subfamily RNA polymerase
sigma
factors
including: Bacillus subtilis
SigX
SW:
SIGX
_BACSU (P35165) (194 aa); Fasta score E(): 1.3e-07, 32.0% identity in 128 aa overlap and Mycobacterium tuberculosis RV2069 SW:RPSC_MYCTU (Q10679) (185 aa); Fasta score E(): 0, 81.2% identity in 181 aa overlap. Contains a probable helix-turn-helix motif at aa 146-167 (Score 1052, SD +2.77) Contains Pfam match to entry PF00776 Sigma70_
ECF
,
Sigma
-70
factor
(
ECF
subfamily). Contains PS01063
Sigma
-70
factors
ECF
subfamily signature.
[a.k.a. gene:17575286, CAC30398.1, NP_302023.1]
7)
Niastella koreensis
AEW01224.1 - RNA polymerase,
sigma
subunit,
SigX
; PFAM:
Sigma
-70, region 4;
Sigma
-70 region 2; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; RNA polymerase
sigma
-70
factor
, Bacteroides expansion family 1; COGs: COG1595 DNA-directed RNA polymerase specialized
sigma
subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: cpi:Cpin_3046 RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; PFAM: RNA polymerase
sigma
-70 region 2; RNA polymerase
sigma
factor
70, region 4 type 2; SPTR: RNA polymerase
ECF
-type
sigma
factor
; TIGRFAM: RNA polymerase
sigma
-70.
[a.k.a. Niako_4984, G8T8P4, nko:Niako_4984]
8)
Halomonas sp. KO116
AJY49710.1 - RNA polymerase,
sigma
-24 subunit, RpoE,
ECF
subfamily; KEGG:
sigX
;
ECF
subfamily RNA polymerase
sigma
-70
factor
; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; TIGRFAM: RNA polymerase
sigma
-70
factor
; RNA polymerase
sigma
factor
,
sigma
-70 family.
[a.k.a. KO116_01217, AJY49710, IPR014289]
9)
Paenibacillus sp. JDR2
ACT01481.1 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2;
sigma
-70 region 4 domain protein; KEGG: bar:GBAA2732 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. Pjdr2_2829, pjd:Pjdr2_2829, IPR014284]
10)
Desulfofarcimen acetoxidans
Dtox_1805 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; KEGG: bar:GBAA2732 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ACV62658.1, IPR014284, C8VXK2]
11)
Spirosoma linguale
Slin_2709 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; KEGG: ppg:PputGB1_1599 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ADB38725.1, ADB38725, IPR014284]
12)
Thermoanaerobacterium thermosaccharolyticum
Tthe_0346 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; KEGG: tex:Teth514_0787 RNA polymerase
sigma
factor
SigX
; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ADL67916.1, D9TQU0_THETC, ttm:Tthe_0346]
13)
Geobacillus sp. WCH70
ACS24909.1 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2;
sigma
-70 region 4 domain protein; KEGG: gtn:GTNG_2187 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. GWCH70_2200, IPR000838, C5D3J4_GEOSW]
14)
Spirosoma linguale
Slin_4745 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2;
sigma
-70 region 4 domain protein; KEGG: psa:PST_2044 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ADB40723.1, ADB40723, sli:Slin_4745]
15)
Ruminiclostridium cellulolyticum
Ccel_0927 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; KEGG: lsp:Bsph_1728 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ACL75293.1, B8I8R0, NC_011898.1]
16)
Spirosoma linguale
Slin_4167 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; KEGG: pap:PSPA7_3530 RNA polymerase
sigma
factor
SigX
; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. ADB40154.1, ADB40154, 8727926]
17)
Bacillus subtilis 168
rsiX - Negative regulator of
sigma
(X) activity; The anti-
sigma
factor
for extracytoplasmic function (
ECF
)
sigma
factor
SigX
, inhibits
SigX
activity and stabilizes it.
[a.k.a. BSU23090, CAB14241.2, Negative regulator of sigma(X) activity]
18)
Caldicellulosiruptor obsidiansis
ADL42283.1 - RNA polymerase,
sigma
-24 subunit,
ECF
subfamily; Manually curated; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; KEGG: tpd:Teth39_0295 RNA polymerase
sigma
factor
SigX
; PFAM:
sigma
-70 region 2 domain protein;
Sigma
-70 region 4 type 2; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. COB47_0982, NC_014392.1, cob:COB47_0982]
19)
Streptomyces coelicolor
SCP1.116 - SCP1.116, possible
ECF
-family
sigma
factor
, len: 380aa; region similar to many eg. TR:Q9RIT1 (EMBL:AJ010584)
ECF
sigma
factor
from Streptomyces coelicolor (264 aa) fasta scores; opt: 485, z-score: 519.3, E(): 1.9e-21, 39.0% identity in 223 aa overlap and SW:P35165 (
SIGX
_BACSU) RNA polymerase
sigma
factor
SigX
from Bacillus subtilis (194 aa) fasta scores; opt: 215, z-score: 237.7, E(): 9e-06, 29.0% identity in 162 aa overlap. Contains Pfam match to entry PF00776 Sigma70_
ECF
,
Sigma
-70
factor
(
ECF
subfamily). Contains a TTA encoded leucine at residue 31, possible target for bldA regulation.
[a.k.a. gene:17765621, CAC36637.1, CAC36637]
20)
Thermoanaerobacter sp. YS13
KHO61902.1 - RNA polymerase
sigma
factor
SigX
; PFAM:
Sigma
-70, region 4;
Sigma
-70 region 2; TIGRFAM: RNA polymerase
sigma
factor
,
sigma
-70 family; Belongs to the
sigma
-70
factor
family.
ECF
subfamily.
[a.k.a. THYS13_23740, NZ_JOOI01000002.1, A0A0B3BQV4_9THEO]
233 matches
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