STRINGSTRING
rpmF rpmF rpmJ rpmJ rpsO rpsO rpsP rpsP rpmB rpmB rpmI rpmI rplL rplL rpsL rpsL rplQ rplQ rplS rplS rplU rplU
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmFSimilarity to COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa)    
Predicted Functional Partners:
rpmJ
Similarity to COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.991
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.991
rpsP
Similarity to COG0228 Ribosomal protein S16(Evalue: 6E-28); Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.991
rpmB
Similarity to COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.991
rpmI
Similarity to COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.989
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.989
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.989
rplQ
Similarity to COG0203 Ribosomal protein L17(Evalue: 3E-34).
  
 
 0.989
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.989
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
Your Current Organism:
Desulfitobacterium hafniense
NCBI taxonomy Id: 138119
Other names: D. hafniense Y51, Desulfitobacterium hafniense Y51, Desulfitobacterium hafniense str. Y51, Desulfitobacterium hafniense strain Y51, Desulfitobacterium sp. Y51
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