node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABM70020.1 | polA | A9601_07341 | A9601_13151 | Putative transcripton factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.981 |
ABM70020.1 | recA | A9601_07341 | A9601_17691 | Putative transcripton factor. | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.777 |
ABM70020.1 | recN | A9601_07341 | A9601_19221 | Putative transcripton factor. | DNA repair protein RecN, ABC transporter; May be involved in recombinational repair of damaged DNA. | 0.508 |
ABM70020.1 | topA | A9601_07341 | A9601_04911 | Putative transcripton factor. | Prokaryotic DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removin [...] | 0.792 |
ABM70020.1 | uvrD | A9601_07341 | A9601_03271 | Putative transcripton factor. | UvrD/REP helicase; COG210 Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]. | 0.472 |
cinA | lexA | A9601_02791 | A9601_14611 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.450 |
cinA | polA | A9601_02791 | A9601_13151 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.637 |
cinA | recA | A9601_02791 | A9601_17691 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.657 |
cinA | recN | A9601_02791 | A9601_19221 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | DNA repair protein RecN, ABC transporter; May be involved in recombinational repair of damaged DNA. | 0.522 |
cinA | sms | A9601_02791 | A9601_01501 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | Putative DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.451 |
cinA | umuC | A9601_02791 | A9601_09231 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | Putative UmuC protein; COG389 Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]. | 0.479 |
cinA | umuD | A9601_02791 | A9601_09241 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | Putative SOS mutagenesis protein UmuD; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Belongs to the peptidase S24 family. | 0.450 |
cinA | uvrD | A9601_02791 | A9601_03271 | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | UvrD/REP helicase; COG210 Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]. | 0.524 |
lexA | cinA | A9601_14611 | A9601_02791 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Molybdenum cofactor biosynthesis protein; COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]; Belongs to the CinA family. | 0.450 |
lexA | polA | A9601_14611 | A9601_13151 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.444 |
lexA | recA | A9601_14611 | A9601_17691 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | RecA bacterial DNA recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.930 |
lexA | recN | A9601_14611 | A9601_19221 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | DNA repair protein RecN, ABC transporter; May be involved in recombinational repair of damaged DNA. | 0.516 |
lexA | topA | A9601_14611 | A9601_04911 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Prokaryotic DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removin [...] | 0.415 |
lexA | umuC | A9601_14611 | A9601_09231 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Putative UmuC protein; COG389 Nucleotidyltransferase/DNA polymerase involved in DNA repair [DNA replication, recombination, and repair]. | 0.746 |
lexA | umuD | A9601_14611 | A9601_09241 | SOS function regulatory protein, LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | Putative SOS mutagenesis protein UmuD; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]; Belongs to the peptidase S24 family. | 0.453 |