Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sde_0386 | ilvE | Sde_0386 | Sde_0388 | Putative CMP-KDO KDO transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | Branched chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.434 |
Sde_0386 | lpxK | Sde_0386 | Sde_2059 | Putative CMP-KDO KDO transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | lipid-A-disaccharide synthase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA). | 0.998 |
Sde_0386 | msbA | Sde_0386 | Sde_0387 | Putative CMP-KDO KDO transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.711 |
Sde_0688 | Sde_0689 | Sde_0688 | Sde_0689 | Beta-ketoacyl synthase. | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.997 |
Sde_0688 | Sde_3725 | Sde_0688 | Sde_3725 | Beta-ketoacyl synthase. | Amino acid adenylation. | 0.999 |
Sde_0688 | dnaK | Sde_0688 | Sde_2733 | Beta-ketoacyl synthase. | Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.443 |
Sde_0688 | msbA | Sde_0688 | Sde_0387 | Beta-ketoacyl synthase. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.595 |
Sde_0688 | rsmA | Sde_0688 | Sde_0737 | Beta-ketoacyl synthase. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.475 |
Sde_0689 | Sde_0688 | Sde_0689 | Sde_0688 | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Beta-ketoacyl synthase. | 0.997 |
Sde_0689 | Sde_3725 | Sde_0689 | Sde_3725 | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Amino acid adenylation. | 0.997 |
Sde_0689 | dnaK | Sde_0689 | Sde_2733 | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.488 |
Sde_0689 | msbA | Sde_0689 | Sde_0387 | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.538 |
Sde_1291 | msbA | Sde_1291 | Sde_0387 | ABC transporter related. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.785 |
Sde_3725 | Sde_0688 | Sde_3725 | Sde_0688 | Amino acid adenylation. | Beta-ketoacyl synthase. | 0.999 |
Sde_3725 | Sde_0689 | Sde_3725 | Sde_0689 | Amino acid adenylation. | Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. | 0.997 |
Sde_3725 | dnaK | Sde_3725 | Sde_2733 | Amino acid adenylation. | Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.477 |
Sde_3725 | ilvE | Sde_3725 | Sde_0388 | Amino acid adenylation. | Branched chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.531 |
Sde_3725 | msbA | Sde_3725 | Sde_0387 | Amino acid adenylation. | Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.712 |
Sde_3725 | rsmA | Sde_3725 | Sde_0737 | Amino acid adenylation. | Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.539 |
dnaK | Sde_0688 | Sde_2733 | Sde_0688 | Chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Beta-ketoacyl synthase. | 0.443 |
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