Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Sde_1300 | csrA | Sde_1300 | Sde_1301 | Aspartate kinase; Belongs to the aspartokinase family. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.579 |
| Sde_2188 | Sde_2198 | Sde_2188 | Sde_2198 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.979 |
| Sde_2188 | Sde_2200 | Sde_2188 | Sde_2200 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.895 |
| Sde_2188 | Sde_2202 | Sde_2188 | Sde_2202 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.896 |
| Sde_2188 | Sde_2204 | Sde_2188 | Sde_2204 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | 0.984 |
| Sde_2188 | Sde_2212 | Sde_2188 | Sde_2212 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.996 |
| Sde_2188 | Sde_3219 | Sde_2188 | Sde_3219 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | MotA/TolQ/ExbB proton channel. | 0.903 |
| Sde_2188 | csrA | Sde_2188 | Sde_1301 | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.568 |
| Sde_2198 | Sde_2188 | Sde_2198 | Sde_2188 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.979 |
| Sde_2198 | Sde_2200 | Sde_2198 | Sde_2200 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.967 |
| Sde_2198 | Sde_2202 | Sde_2198 | Sde_2202 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.955 |
| Sde_2198 | Sde_2204 | Sde_2198 | Sde_2204 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | 0.984 |
| Sde_2198 | Sde_2212 | Sde_2198 | Sde_2212 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.959 |
| Sde_2198 | Sde_3219 | Sde_2198 | Sde_3219 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | MotA/TolQ/ExbB proton channel. | 0.836 |
| Sde_2198 | csrA | Sde_2198 | Sde_1301 | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.557 |
| Sde_2200 | Sde_2188 | Sde_2200 | Sde_2188 | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family. | 0.895 |
| Sde_2200 | Sde_2198 | Sde_2200 | Sde_2198 | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar hook-associated 2-like protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. | 0.967 |
| Sde_2200 | Sde_2202 | Sde_2200 | Sde_2202 | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.902 |
| Sde_2200 | Sde_2204 | Sde_2200 | Sde_2204 | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family. | 0.950 |
| Sde_2200 | Sde_2212 | Sde_2200 | Sde_2212 | Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.943 |
page 1 of 4