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xylA xylA xylB xylB fruA fruA lacZ lacZ YPO3211 YPO3211 xylB-2 xylB-2 glk glk YPO4037 YPO4037 YPO2036 YPO2036 YPO4034 YPO4034 lyx lyx
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
xylAXylose isomerase; Similar to Escherichia coli xylose isomerase XylA SW:XYLA_ECOLI (P00944) (440 aa) fasta scores: E(): 0, 85.4% id in 438 aa, and to Klebsiella pneumoniae xylose isomerase XylA SW:XYLA_KLEPN (P29442) (440 aa) fasta scores: E(): 0,84.2% id in 438 aa. (439 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; Similar to Escherichia coli xylulose kinase XylB SW:XYLB_ECOLI (P09099) (484 aa) fasta scores: E(): 0, 72.0% id in 482 aa, and to Klebsiella pneumoniae xylulose kinase XylB SW:XYLB_KLEPN (P29444) (483 aa) fasta scores: E(): 0,66.4% id in 482 aa.
 
 
 0.990
fruA
Similar to Escherichia coli PTS system,fructose-specific IIBC component FruA or PtsF SW:PTFB_ECOLI (P20966) (563 aa) fasta scores: E(): 0, 77.2% id in 569 aa,and to Vibrio cholerae PTS system, fructose-specific IIBC component VCA0516 TR:Q9KM72 (EMBL:AE004382) (580 aa) fasta scores: E(): 0, 65.7% id in 531 aa.
     
 0.954
lacZ
Beta-galactosidase; Similar to Escherichia coli beta-galactosidase LacZ SW:BGAL_ECOLI (P00722) (1023 aa) fasta scores: E(): 0,62.5% id in 1046 aa, and to Enterobacter cloacae beta-galactosidase lacZ SW:BGAL_ENTCL (Q47077) (1028 aa) fasta scores: E(): 0, 60.4% id in 1046 aa; Belongs to the glycosyl hydrolase 2 family.
    
 0.949
YPO3211
Similar to Escherichia coli hypothetical protein YajF SW:YAJF_ECOLI (P23917) (302 aa) fasta scores: E(): 0,69.2% id in 299 aa, and to Vibrio cholerae ROK family protein Vc0270 TR:Q9KV86 (EMBL:AE004115) (326 aa) fasta scores: E(): 0, 46.3% id in 298 aa.
  
 
 0.943
xylB-2
Putative carbohydrate kinase; Similar to Thermoanaerobacter ethanolicus xylulose kinase XylB TR:O30364 (EMBL:AF001974) (500 aa) fasta scores: E(): 0, 40.7% id in 511 aa, and to Bacillus subtilis xylulose kinase XylB SW:XYLB_BACSU (P39211) (499 aa) fasta scores: E(): 0, 36.6% id in 517 aa.
 
 
 0.939
glk
Glucokinase; Similar to Escherichia coli glucokinase Glk SW:HXKG_ECOLI (P46880) (321 aa) fasta scores: E(): 0, 79.4% id in 321 aa, and to Neisseria meningitidis (serogroup A) glucokinase Glk TR:Q9JQX3 (EMBL:AL162756) (328 aa) fasta scores: E(): 0, 46.6% id in 313 aa; Belongs to the bacterial glucokinase family.
   
 
 0.937
YPO4037
Sugar-binding periplasmic protein; Similar to Agrobacterium tumefaciens multiple sugar-binding periplasmic receptor ChvE SW:CVE1_AGRTU (P25548) (354 aa) fasta scores: E(): 3.6e-19, 36.0% id in 350 aa, and to Escherichia coli D-xylose-binding periplasmic protein precursor XylF SW:XYLF_ECOLI (P37387) (330 aa) fasta scores: E(): 0, 82.1% id in 330 aa.
 
  
 0.741
YPO2036
Putative transcriptional regulatory protein; N-terminal region is similar to the N-terminus of Bacillus subtilis xylose repressor XylR SW:XYLR_BACSU (P16557) (384 aa) fasta scores: E(): 2.4e-15, 27.7% id in 256 aa. Full length CDS has weak similarity to Rhizobium sp hypothetical protein Y4FQ SW:Y4FQ_RHISN (P55455) (392 aa) fasta scores: E(): 1.4e-27, 30.1% id in 366 aa.
    
 0.671
YPO4034
Putative AraC-family transcriptional regulatory protein; N-terminus similar to Bacillus subtilis catabolite control protein A CcpA SW:CCPA_BACSU (P25144) (334 aa) fasta scores: E(): 8.7e-06, 23.8% id in 281 aa Full length CDS similar to Escherichia coli xylose operon regulatory protein XylR SW:XYLR_ECOLI (P37390) (392 aa) fasta scores: E(): 0, 79.7% id in 395 aa.
 
  
 0.658
lyx
Putative L-xylulose kinase; Similar to Escherichia coli cryptic L-xylulose kinase Lyx or LyxK or XylK or SgbK SW:LYXK_ECOLI (P37677) (498 aa) fasta scores: E(): 0, 42.8% id in 495 aa, and to Haemophilus influenzae probable L-xylulose kinase Lyx or LyxK or SgbK or Hi1027 SW:LYXK_HAEIN (P44991) (485 aa) fasta scores: E(): 0, 39.5% id in 499 aa.
 
 
 0.595
Your Current Organism:
Yersinia pestis
NCBI taxonomy Id: 214092
Other names: Y. pestis CO92, Yersinia pestis CO92, Yersinia pestis str. CO92, Yersinia pestis strain CO92
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