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rpmG1 rpmG1 rpmB2 rpmB2 rpsN2 rpsN2 rpsR2 rpsR2 rpmL rpmL rpmE_1 rpmE_1 rpmF rpmF rpsH rpsH rpmD rpmD rpsJ rpsJ rpmJ rpmJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmG1Ribosomal protein L33 RpmG1; Involved in translation; Belongs to the bacterial ribosomal protein bL33 family. (54 aa)    
Predicted Functional Partners:
rpmB2
50S ribosomal protein L28 RpmB2; Involved in ribosome activity; Belongs to the bacterial ribosomal protein bL28 family.
 
 
 0.998
rpsN2
Ribosomal protein S14 RpsN2; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
 
 
 0.997
rpsR2
Ribosomal protein S18 RpsR2; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.995
rpmL
50S ribosomal protein L35, RpmL; Translation; Belongs to the bacterial ribosomal protein bL35 family.
  
 
 0.993
rpmE_1
50S ribosomal protein L31 RpmE_1; Involved in translation; Belongs to the bacterial ribosomal protein bL31 family.
 
 
 0.983
rpmF
50S ribosomal protein L32 RpmF; Involved in translation mechanism; Belongs to the bacterial ribosomal protein bL32 family.
 
 
 0.971
rpsH
30S ribosomal protein S8, RpsH; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
  
 
 0.961
rpmD
50S ribosomal protein L30, RpmD.
  
 
 0.960
rpsJ
30S ribosomal protein S10, RpsJ; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.959
rpmJ
50S ribosomal protein L36 RpmJ; Ribosome function; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.959
Your Current Organism:
Mycobacterium marinum
NCBI taxonomy Id: 216594
Other names: M. marinum M, Mycobacterium marinum M, Mycobacterium marinum str. M, Mycobacterium marinum strain M
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