STRINGSTRING
rpsF rpsF rpsJ rpsJ rpsR rpsR rpsK rpsK rpsP rpsP rpsE rpsE rpsN rpsN rpsI rpsI rpmG rpmG rpsB rpsB rplI rplI
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsFRibosomal protein S06; Binds together with S18 to 16S ribosomal RNA. (110 aa)    
Predicted Functional Partners:
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 0.999
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
 
 
 0.999
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 0.999
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 0.999
rpsE
Ribosomal protein S05; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 0.999
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
 0.999
rpsI
Ribosomal protein S09; Belongs to the universal ribosomal protein uS9 family.
   
 0.999
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.999
rpsB
Ribosomal protein S02; Belongs to the universal ribosomal protein uS2 family.
   
 0.999
rplI
Ribosomal protein L09; Binds to the 23S rRNA.
 
 
 0.999
Your Current Organism:
Aquifex aeolicus
NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5
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