STRINGSTRING
Ajs_0512 Ajs_0512 Ajs_0514 Ajs_0514 Ajs_0513 Ajs_0513 Ajs_1523 Ajs_1523 Ajs_0511 Ajs_0511 Ajs_0510 Ajs_0510 Ajs_1028 Ajs_1028 Ajs_3929 Ajs_3929 Ajs_1027 Ajs_1027
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ajs_0512PFAM: 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; KEGG: pat:Patl_2273 2OG-Fe(II) oxygenase. (234 aa)    
Predicted Functional Partners:
Ajs_0514
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: pat:Patl_2275 TonB-dependent receptor.
 
  
 0.969
Ajs_0513
(S)-2-hydroxy-acid oxidase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: pat:Patl_2274 (S)-2-hydroxy-acid oxidase.
 
  
 0.900
Ajs_1523
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
 
  
 0.802
Ajs_0511
KEGG: rso:RSc2353 probable signal peptide protein.
       0.687
Ajs_0510
PFAM: cytochrome B561; KEGG: rsp:RSP_2807 putative cytochrome b.
       0.683
Ajs_1028
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gvi:glr0349 ferrichrome-iron receptor.
 
  
 0.581
Ajs_3929
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: sfr:Sfri_2549 TonB-dependent siderophore receptor.
 
  
 0.537
Ajs_1027
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: bbr:BB1785 putative ferrisiderophore receptor.
 
    0.409
Your Current Organism:
Acidovorax sp. JS42
NCBI taxonomy Id: 232721
Other names: A. sp. JS42
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