STRINGSTRING
ku ku Acid_3033 Acid_3033 Acid_7844 Acid_7844 ku-2 ku-2 Acid_5076 Acid_5076 Acid_6821 Acid_6821 Acid_5077 Acid_5077 Acid_7843 Acid_7843 Acid_3436 Acid_3436 Acid_3439 Acid_3439 Acid_3437 Acid_3437
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kuDNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (267 aa)    
Predicted Functional Partners:
Acid_3033
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sme:SMc03959 hypothetical protein.
 
  
 0.932
Acid_7844
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: pcu:pc1833 hypothetical protein.
 
  
 0.932
ku-2
Ku domain protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
  
  
 
0.904
Acid_5076
KEGG: mta:Moth_2082 hypothetical protein.
 
  
 0.872
Acid_6821
PFAM: ATP dependent DNA ligase; KEGG: ret:RHE_PE00252 putative ATP-dependent DNA ligase protein.
 
  
 0.826
Acid_5077
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: sme:SMb20008 DNA ligase.
 
  
 0.825
Acid_7843
KEGG: aba:Acid345_0779 ATP dependent DNA ligase.
 
  
 0.825
Acid_3436
KEGG: rpb:RPB_1874 hypothetical protein.
 
     0.658
Acid_3439
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: hma:rrnAC0575 mandelate racemase/muconate lactonizing enzyme family.
       0.628
Acid_3437
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: nmu:Nmul_A1486 hemerythrin HHE cation binding region.
 
     0.609
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.