node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Acid_0230 | Acid_3190 | Acid_0230 | Acid_3190 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein. | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.691 |
Acid_0230 | Acid_6467 | Acid_0230 | Acid_6467 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein. | TIGRFAM: GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: lic:LIC11831 guanine monophosphate synthase. | 0.449 |
Acid_0230 | truB | Acid_0230 | Acid_6299 | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.873 |
Acid_1839 | Acid_6467 | Acid_1839 | Acid_6467 | FMN adenylyltransferase / riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; KEGG: aba:Acid345_2631 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | TIGRFAM: GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: lic:LIC11831 guanine monophosphate synthase. | 0.406 |
Acid_1839 | rbfA | Acid_1839 | Acid_5183 | FMN adenylyltransferase / riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; KEGG: aba:Acid345_2631 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.407 |
Acid_1839 | truB | Acid_1839 | Acid_6299 | FMN adenylyltransferase / riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; cytidyltransferase-related domain; PFAM: Riboflavin kinase / FAD synthetase; KEGG: aba:Acid345_2631 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.967 |
Acid_3190 | Acid_0230 | Acid_3190 | Acid_0230 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bja:bll3586 hypothetical protein. | 0.691 |
Acid_3190 | Acid_3732 | Acid_3190 | Acid_3732 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | KEGG: LOC626528; hypothetical protein LOC626528. | 0.408 |
Acid_3190 | Acid_6432 | Acid_3190 | Acid_6432 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | KEGG: rba:RB8177 hypothetical protein, putative transmembrane protein. | 0.408 |
Acid_3190 | Acid_6467 | Acid_3190 | Acid_6467 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | TIGRFAM: GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: lic:LIC11831 guanine monophosphate synthase. | 0.506 |
Acid_3190 | infB | Acid_3190 | Acid_5181 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.408 |
Acid_3190 | pnp | Acid_3190 | Acid_7759 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.471 |
Acid_3190 | rbfA | Acid_3190 | Acid_5183 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.616 |
Acid_3190 | rpsO | Acid_3190 | Acid_7760 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.606 |
Acid_3190 | truB | Acid_3190 | Acid_6299 | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.913 |
Acid_3732 | Acid_3190 | Acid_3732 | Acid_3190 | KEGG: LOC626528; hypothetical protein LOC626528. | NusB/RsmB/TIM44; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: aba:Acid345_4229 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.408 |
Acid_3732 | Acid_6467 | Acid_3732 | Acid_6467 | KEGG: LOC626528; hypothetical protein LOC626528. | TIGRFAM: GMP synthase, small subunit; PFAM: glutamine amidotransferase class-I; GMP synthase domain protein; KEGG: lic:LIC11831 guanine monophosphate synthase. | 0.623 |
Acid_3732 | pnp | Acid_3732 | Acid_7759 | KEGG: LOC626528; hypothetical protein LOC626528. | 3' exoribonuclease; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.851 |
Acid_3732 | rbfA | Acid_3732 | Acid_5183 | KEGG: LOC626528; hypothetical protein LOC626528. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.855 |
Acid_3732 | rpsO | Acid_3732 | Acid_7760 | KEGG: LOC626528; hypothetical protein LOC626528. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.895 |