Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
MJ_1331 | MJ_1332 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1331. | GTP-binding protein, member of GTP1/OBG-family; Similar to SP:P42942 PID:1165215 PID:1323377 PID:790501 percent identity: 39.69; identified by sequence similarity; putative; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.777 |
MJ_1331 | MJ_1333 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1331. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1333. | 0.547 |
MJ_1332 | MJ_1331 | GTP-binding protein, member of GTP1/OBG-family; Similar to SP:P42942 PID:1165215 PID:1323377 PID:790501 percent identity: 39.69; identified by sequence similarity; putative; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1331. | 0.777 |
MJ_1332 | MJ_1333 | GTP-binding protein, member of GTP1/OBG-family; Similar to SP:P42942 PID:1165215 PID:1323377 PID:790501 percent identity: 39.69; identified by sequence similarity; putative; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1333. | 0.547 |
MJ_1333 | MJ_1331 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1333. | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1331. | 0.547 |
MJ_1333 | MJ_1332 | Hypothetical protein; Identified by GeneMark; putative; M. jannaschii predicted coding region MJ1333. | GTP-binding protein, member of GTP1/OBG-family; Similar to SP:P42942 PID:1165215 PID:1323377 PID:790501 percent identity: 39.69; identified by sequence similarity; putative; Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.547 |