node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TDE_1750 | rplA | TDE_1750 | TDE_2424 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.757 |
TDE_1750 | rplC | TDE_1750 | TDE_0767 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.786 |
TDE_1750 | rplK | TDE_1750 | TDE_2425 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.670 |
TDE_1750 | rplL | TDE_1750 | TDE_2422 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.756 |
TDE_1750 | rplM | TDE_1750 | TDE_0852 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.620 |
TDE_1750 | rplS | TDE_1750 | TDE_0885 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.675 |
TDE_1750 | rplU | TDE_1750 | TDE_1751 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.981 |
TDE_1750 | rpmA | TDE_1750 | TDE_1749 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. | 0.990 |
TDE_1750 | rpsB | TDE_1750 | TDE_2347 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.830 |
TDE_1750 | rpsI | TDE_1750 | TDE_0853 | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. | 0.592 |
rplA | TDE_1750 | TDE_2424 | TDE_1750 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Conserved hypothetical protein; Identified by similarity to OMNI:TP0744; match to protein family HMM PF04327. | 0.757 |
rplA | rplC | TDE_2424 | TDE_0767 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.992 |
rplA | rplK | TDE_2424 | TDE_2425 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.999 |
rplA | rplL | TDE_2424 | TDE_2422 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.998 |
rplA | rplM | TDE_2424 | TDE_0852 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.994 |
rplA | rplS | TDE_2424 | TDE_0885 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.991 |
rplA | rplU | TDE_2424 | TDE_1751 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.981 |
rplA | rpmA | TDE_2424 | TDE_1749 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family. | 0.989 |
rplA | rpsB | TDE_2424 | TDE_2347 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.990 |
rplA | rpsI | TDE_2424 | TDE_0853 | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. | 0.990 |