Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplI | rplQ | MAP_0070 | MAP_4234 | RplI; Binds to the 23S rRNA. | RplQ. | 0.999 |
rplI | rplT | MAP_0070 | MAP_1354 | RplI; Binds to the 23S rRNA. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplI | rplU | MAP_0070 | MAP_2266c | RplI; Binds to the 23S rRNA. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplI | rplY | MAP_0070 | MAP_0979c | RplI; Binds to the 23S rRNA. | RplY; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.999 |
rplI | rpmA | MAP_0070 | MAP_2265c | RplI; Binds to the 23S rRNA. | RpmA; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplI | rpmF | MAP_0070 | MAP_0915 | RplI; Binds to the 23S rRNA. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.979 |
rplI | rpmI | MAP_0070 | MAP_1353 | RplI; Binds to the 23S rRNA. | RpmI; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplI | rpsF | MAP_0070 | MAP_0067 | RplI; Binds to the 23S rRNA. | RpsF; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplI | rpsR | MAP_0070 | MAP_0069 | RplI; Binds to the 23S rRNA. | RpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplI | rpsT | MAP_0070 | MAP_2224 | RplI; Binds to the 23S rRNA. | RpsT; Binds directly to 16S ribosomal RNA. | 0.999 |
rplQ | rplI | MAP_4234 | MAP_0070 | RplQ. | RplI; Binds to the 23S rRNA. | 0.999 |
rplQ | rplT | MAP_4234 | MAP_1354 | RplQ. | RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplQ | rplU | MAP_4234 | MAP_2266c | RplQ. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplQ | rplY | MAP_4234 | MAP_0979c | RplQ. | RplY; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. | 0.999 |
rplQ | rpmA | MAP_4234 | MAP_2265c | RplQ. | RpmA; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplQ | rpmF | MAP_4234 | MAP_0915 | RplQ. | Hypothetical protein; Belongs to the bacterial ribosomal protein bL32 family. | 0.999 |
rplQ | rpmI | MAP_4234 | MAP_1353 | RplQ. | RpmI; Belongs to the bacterial ribosomal protein bL35 family. | 0.999 |
rplQ | rpsF | MAP_4234 | MAP_0067 | RplQ. | RpsF; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
rplQ | rpsR | MAP_4234 | MAP_0069 | RplQ. | RpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.999 |
rplQ | rpsT | MAP_4234 | MAP_2224 | RplQ. | RpsT; Binds directly to 16S ribosomal RNA. | 0.999 |
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