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dnaA dnaA dnaN dnaN dnaB dnaB PAM_571 PAM_571 dnaB-2 dnaB-2 PAM_334 PAM_334 PAM_335 PAM_335 PAM_341 PAM_341 PAM_375 PAM_375 dnaB-3 dnaB-3 dnaB-4 dnaB-4
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
dnaAChromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. (507 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
 
 0.997
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
 
 
 
 0.877
PAM_571
Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity.
 
 
 
 0.875
dnaB-2
Replicative DNA helicase; Identified by sequence similarity; putative.
   
 
 0.859
PAM_334
Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity.
   
 
 0.859
PAM_335
Hypothetical protein; Identified by Glimmer2.
   
 
 0.859
PAM_341
Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity.
   
 
 0.859
PAM_375
Hypothetical protein; Possible pseudogene of replicative DNA helicase (DnaB); identified by sequence similarity.
   
 
 0.859
dnaB-3
Replicative DNA helicase; Identified by sequence similarity; putative.
   
 
 0.859
dnaB-4
Replicative DNA helicase; Identified by sequence similarity; putative.
   
 
 0.859
Your Current Organism:
Onion yellows
NCBI taxonomy Id: 262768
Other names: O. yellows phytoplasma OY-M, Onion yellows phytoplasma OY-M
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