STRINGSTRING
orc2 orc2 APE_0188.1 APE_0188.1 priA priA priB priB tfb-2 tfb-2 orc1 orc1 APE_1323.1 APE_1323.1 APE_0152a APE_0152a polA polA fen fen dnaG dnaG
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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orc2Origin recognition complex subunit 2 Orc2; Involved in regulation of DNA replication (By similarity). Binds DNA; Belongs to the CDC6/cdc18 family. (410 aa)    
Predicted Functional Partners:
APE_0188.1
Minichromosome maintenance protein; DNA replication licensing factor; MCM; Belongs to the MCM family.
 
 0.982
priA
DNA primase small subunit; Catalytic subunit of DNA primase, an RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. The small subunit contains the primase catalytic core and has DNA synthesis activity on its own. Binding to the large subunit stabilizes and modulates the activity, increasing the rate of DNA synthesis while decreasing the length of the DNA fragments, and conferring RNA synthesis capability. The DNA polymerase activity may enable DNA primase to also catalyze primer extension after primer synthesis. [...]
 
 
 0.907
priB
DNA primase 46 kDa subunit; p46.
   
 0.904
tfb-2
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
 
  
 0.867
orc1
Origin recognition complex subunit 1 Orc1; Involved in regulation of DNA replication (By similarity). Binds DNA; Belongs to the CDC6/cdc18 family.
  
 
 
0.803
APE_1323.1
Single-stranded DNA binding protein; SSB.
  
 
 0.795
APE_0152a
Hypothetical protein.
       0.771
polA
Family B DNA polymerase I.
 
 0.756
fen
Flap structure-specific endonuclease; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Binds the unpaired 3'-DNA end and kinks the DNA to facilitate 5' cleavage specificity. Cleaves one nucleotide into the double-stranded DNA from the junction in flap DNA, leaving a nick for ligation. Also involved in the base excision repair [...]
 
  
 0.746
dnaG
Exosome complex RNA helicase DnaG homologue; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
   
 0.737
Your Current Organism:
Aeropyrum pernix
NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1
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