node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Clim_0293 | cmk | Clim_0293 | Clim_0348 | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.489 |
Clim_0293 | der | Clim_0293 | Clim_0421 | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.638 |
Clim_0293 | ffh | Clim_0293 | Clim_1399 | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.495 |
Clim_0293 | gpsA | Clim_0293 | Clim_2416 | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_2057 glycerol-3-phosphate dehydrogenase (NAD(P)+). | 0.458 |
Clim_0420 | der | Clim_0420 | Clim_0421 | Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.700 |
Clim_0896 | der | Clim_0896 | Clim_0421 | TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.703 |
Clim_0896 | rplA | Clim_0896 | Clim_0193 | TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.696 |
Clim_1997 | cmk | Clim_1997 | Clim_0348 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | 0.900 |
Clim_1997 | der | Clim_1997 | Clim_0421 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.861 |
Clim_1997 | ftsY | Clim_1997 | Clim_0259 | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.411 |
cmk | Clim_0293 | Clim_0348 | Clim_0293 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.489 |
cmk | Clim_1997 | Clim_0348 | Clim_1997 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.900 |
cmk | der | Clim_0348 | Clim_0421 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.962 |
cmk | ffh | Clim_0348 | Clim_1399 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. | 0.660 |
cmk | ftsY | Clim_0348 | Clim_0259 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). | 0.543 |
cmk | gpsA | Clim_0348 | Clim_2416 | KEGG: cph:Cpha266_0417 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region. | Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Ketopantoate reductase ApbA/PanE domain protein; KEGG: plt:Plut_2057 glycerol-3-phosphate dehydrogenase (NAD(P)+). | 0.440 |
der | Clim_0293 | Clim_0421 | Clim_0293 | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | PFAM: phosphatidate cytidylyltransferase; KEGG: cph:Cpha266_0362 phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.638 |
der | Clim_0420 | Clim_0421 | Clim_0420 | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Protein of unknown function DUF59; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. | 0.700 |
der | Clim_0896 | Clim_0421 | Clim_0896 | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: cph:Cpha266_1793 GTP-binding protein TypA. | 0.703 |
der | Clim_1997 | Clim_0421 | Clim_1997 | Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pvi:Cvib_1473 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. | 0.861 |