Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Jann_1746 | Jann_1748 | Jann_1746 | Jann_1748 | Hypothetical protein. | Protein of unknown function DUF1311. | 0.773 |
Jann_1746 | ureA | Jann_1746 | Jann_1745 | Hypothetical protein. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.608 |
Jann_1746 | ureB | Jann_1746 | Jann_1747 | Hypothetical protein. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.773 |
Jann_1746 | ureC | Jann_1746 | Jann_1752 | Hypothetical protein. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.601 |
Jann_1746 | ureD | Jann_1746 | Jann_1744 | Hypothetical protein. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.537 |
Jann_1746 | ureE | Jann_1746 | Jann_1754 | Hypothetical protein. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.497 |
Jann_1746 | ureF | Jann_1746 | Jann_1755 | Hypothetical protein. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.497 |
Jann_1748 | Jann_1746 | Jann_1748 | Jann_1746 | Protein of unknown function DUF1311. | Hypothetical protein. | 0.773 |
Jann_1748 | ureA | Jann_1748 | Jann_1745 | Protein of unknown function DUF1311. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.739 |
Jann_1748 | ureB | Jann_1748 | Jann_1747 | Protein of unknown function DUF1311. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.851 |
Jann_1748 | ureC | Jann_1748 | Jann_1752 | Protein of unknown function DUF1311. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.705 |
Jann_1748 | ureD | Jann_1748 | Jann_1744 | Protein of unknown function DUF1311. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.677 |
Jann_1748 | ureE | Jann_1748 | Jann_1754 | Protein of unknown function DUF1311. | UreE urease accessory-like protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.538 |
Jann_1748 | ureF | Jann_1748 | Jann_1755 | Protein of unknown function DUF1311. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.538 |
Jann_2607 | Jann_4115 | Jann_2607 | Jann_4115 | Ureidoglycolate hydrolase. | Putative ureidoglycolate hydrolase. | 0.967 |
Jann_2607 | ureA | Jann_2607 | Jann_1745 | Ureidoglycolate hydrolase. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.902 |
Jann_2607 | ureB | Jann_2607 | Jann_1747 | Ureidoglycolate hydrolase. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.905 |
Jann_2607 | ureC | Jann_2607 | Jann_1752 | Ureidoglycolate hydrolase. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.902 |
Jann_4115 | Jann_2607 | Jann_4115 | Jann_2607 | Putative ureidoglycolate hydrolase. | Ureidoglycolate hydrolase. | 0.967 |
Jann_4115 | ureA | Jann_4115 | Jann_1745 | Putative ureidoglycolate hydrolase. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.902 |
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