Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_0225 | VF_2432 | VF_0225 | VF_2432 | Vegetatible incompatibility protein HET-E-1. | RNA-binding protein. | 0.714 |
VF_0225 | VF_A0486 | VF_0225 | VF_A0486 | Vegetatible incompatibility protein HET-E-1. | Hypothetical protein. | 0.660 |
VF_0225 | gpmM | VF_0225 | VF_0202 | Vegetatible incompatibility protein HET-E-1. | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.932 |
VF_0225 | pgk | VF_0225 | VF_0442 | Vegetatible incompatibility protein HET-E-1. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.431 |
VF_0225 | rjg | VF_0225 | VF_0153 | Vegetatible incompatibility protein HET-E-1. | Right junction gene, LPS locus. | 0.973 |
VF_2157 | gpmM | VF_2157 | VF_0202 | Glycerate kinase; Belongs to the glycerate kinase type-1 family. | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.911 |
VF_2432 | VF_0225 | VF_2432 | VF_0225 | RNA-binding protein. | Vegetatible incompatibility protein HET-E-1. | 0.714 |
VF_2432 | VF_A0486 | VF_2432 | VF_A0486 | RNA-binding protein. | Hypothetical protein. | 0.425 |
VF_2432 | gpmM | VF_2432 | VF_0202 | RNA-binding protein. | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.932 |
VF_2432 | rjg | VF_2432 | VF_0153 | RNA-binding protein. | Right junction gene, LPS locus. | 0.801 |
VF_A0486 | VF_0225 | VF_A0486 | VF_0225 | Hypothetical protein. | Vegetatible incompatibility protein HET-E-1. | 0.660 |
VF_A0486 | VF_2432 | VF_A0486 | VF_2432 | Hypothetical protein. | RNA-binding protein. | 0.425 |
VF_A0486 | gpmM | VF_A0486 | VF_0202 | Hypothetical protein. | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.932 |
VF_A0486 | rjg | VF_A0486 | VF_0153 | Hypothetical protein. | Right junction gene, LPS locus. | 0.801 |
eno | gpmM | VF_2075 | VF_0202 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.996 |
eno | pgi | VF_2075 | VF_0304 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | Glucosephosphate isomerase. | 0.991 |
eno | pgk | VF_2075 | VF_0442 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.992 |
eno | tpiA | VF_2075 | VF_0206 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.986 |
gpmM | VF_0225 | VF_0202 | VF_0225 | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | Vegetatible incompatibility protein HET-E-1. | 0.932 |
gpmM | VF_2157 | VF_0202 | VF_2157 | Phosphoglycero mutase III, cofactor-independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | Glycerate kinase; Belongs to the glycerate kinase type-1 family. | 0.911 |
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