STRINGSTRING
BPUM_1375 BPUM_1375 BPUM_1392 BPUM_1392 BPUM_1606 BPUM_1606 BPUM_2084 BPUM_2084 BPUM_3389 BPUM_3389 secE secE BPUM_2894 BPUM_2894 glsA-2 glsA-2 BPUM_2629 BPUM_2629 BPUM_1373 BPUM_1373 BPUM_2037 BPUM_2037
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPUM_1375Hypothetical protein; Belongs to the UPF0358 family. (93 aa)    
Predicted Functional Partners:
BPUM_1392
Regulator; Belongs to the UPF0342 family.
 
     0.778
BPUM_1606
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.740
BPUM_2084
Fur family transcriptional regulator; Belongs to the Fur family.
  
     0.639
BPUM_3389
Hypothetical protein.
  
     0.626
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.569
BPUM_2894
Hypothetical protein.
  
     0.543
glsA-2
Glutaminase; Catalyzes the formation of glutamate from glutamine; Belongs to the glutaminase family.
       0.528
BPUM_2629
Hypothetical protein; Belongs to the UPF0354 family.
  
     0.501
BPUM_1373
Hypothetical protein.
 
     0.497
BPUM_2037
Ferredoxin.
  
     0.472
Your Current Organism:
Bacillus pumilus
NCBI taxonomy Id: 315750
Other names: B. pumilus SAFR-032, Bacillus pumilus SAFR-032, Bacillus pumilus str. SAFR-032, Bacillus pumilus strain SAFR-032
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