node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplM | rplS | Pden_2969 | Pden_3884 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
rplM | rplU | Pden_2969 | Pden_4103 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
rplM | rpmB | Pden_2969 | Pden_2433 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L28; KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.988 |
rplM | rpmE | Pden_2969 | Pden_3885 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.986 |
rplM | rpmF | Pden_2969 | Pden_1859 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sit:TM1040_0916 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.987 |
rplM | rpmG | Pden_2969 | Pden_4292 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L33; KEGG: sil:SPO2965 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.989 |
rplM | rpmJ | Pden_2969 | Pden_0055 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein L36; KEGG: hne:HNE_3350 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.988 |
rplM | rpsO | Pden_2969 | Pden_2760 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.995 |
rplM | rpsP | Pden_2969 | Pden_3881 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | PFAM: ribosomal protein S16; KEGG: rde:RD1_1311 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.993 |
rplM | rpsT | Pden_2969 | Pden_4514 | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.990 |
rplS | rplM | Pden_3884 | Pden_2969 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.996 |
rplS | rplU | Pden_3884 | Pden_4103 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.994 |
rplS | rpmB | Pden_3884 | Pden_2433 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein L28; KEGG: sil:SPO0974 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.990 |
rplS | rpmE | Pden_3884 | Pden_3885 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.998 |
rplS | rpmF | Pden_3884 | Pden_1859 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: sit:TM1040_0916 ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.991 |
rplS | rpmG | Pden_3884 | Pden_4292 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein L33; KEGG: sil:SPO2965 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. | 0.979 |
rplS | rpmJ | Pden_3884 | Pden_0055 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein L36; KEGG: hne:HNE_3350 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.984 |
rplS | rpsO | Pden_3884 | Pden_2760 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.992 |
rplS | rpsP | Pden_3884 | Pden_3881 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | PFAM: ribosomal protein S16; KEGG: rde:RD1_1311 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.999 |
rplS | rpsT | Pden_3884 | Pden_4514 | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. | 0.976 |